When disabling an application, the code pertaining to the disabled application gets added to the code_cache. Hence when enabling/disabling an application, the contents of the code_cache gets modified and it will have content that is not meant to be archived in source control. Therefore, if you are using source control, it is not recommended to use disable and enable application scripts to modify and archive the code.
invoke disable-application
invoke enable-application
The following commands are recommended instead:
invoke remove-application
invoke create-application
